I am ruing one simple python program with my files, and this program worked fine in one of my machine with the file, fileA.bed, but this program doesn't work in another machine with the same file. I installed same python version, 2.7.6, same required modules, scipy ('0.15.1'), numpy('1.8.2'), iced ('0.2.2-git') (same versions in both machines). The error message is something about ValueError: column index exceeds matrix dimensions (please see below). Could you please help if you know what is causing this prob?
python Dense.py -b fileA.bed
Traceback (most recent call last): File "Dense.py", line 34, in counts = io.load_counts(args.filename, lengths=lengths) File "$PATH/Python-2.7.6/venv_iced_2.2/lib/python2.7/site-packages/iced/io/_io_else.py", line 30, in load_counts counts = sparse.coo_matrix((X[:, 2], (X[:, 0], X[:, 1])), shape=shape) File "$PATH/Python-2.7.6/venv_iced_2.2/lib/python2.7/site-packages/scipy/sparse/coo.py", line 206, in init self._check() File "$PATH/Python-2.7.6/venv_iced_2.2/lib/python2.7/site-packages/scipy/sparse/coo.py", line 262, in _check raise ValueError('column index exceeds matrix dimensions') ValueError: column index exceeds matrix dimensions