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I want to find correlations, p-values and 95% CI between one specific column and all other columns in a dataframe. The 'broom' package provides an example how to do that between two specific columns using cor.test with dplyr and pipes. For mtcars and, say, mpg column we can run a correlation with another column:

library(dplyr)
library(broom)
mtcars %>% do(tidy(cor.test(.$mpg, .$cyl)))

estimate statistic      p.value parameter   conf.low  conf.high
1 -0.852162 -8.919699 6.112687e-10        30 -0.9257694 -0.7163171

The output is a single-row dataframe. I would like to run cor.test for mpg with each column so that that the output for each column goes into a separate row. The desired output would look like this, where mpg column was paired with every other column.

    estimate statistic      p.value parameter   conf.low     conf.high
cyl  -0.852162  -8.919699 6.112687e-10       30 -0.9257694 -0.7163171
disp -0.8475514 -8.747152 9.380327e-10       30 -0.9233594 -0.7081376
hp   -0.7761684 -6.742389 1.787835e-07       30 -0.8852686 -0.5860994
drat  0.6811719  5.096042 1.77624e-05        30 0.4360484  0.832201
wt   -0.8676594 -9.559044 1.293959e-10       30 -0.9338264 -0.7440872
qsec  0.418684   2.525213 0.01708199         30 0.08195487 0.6696186
vs    0.6640389  4.864385 3.415937e-05       30 0.410363 0.8223262
am    0.5998324  4.106127 0.0002850207       30 0.3175583  0.784452
gear  0.4802848  2.999191 0.005400948        30 0.1580618 0.7100628
carb -0.5509251  -3.61575 0.001084446        30 -0.754648 -0.2503183

Note the added row names, which show what column was paired with mpg for the cor.test. Ideally, I'd like to do that with dplyr and pipes.

asked 33 secs ago

برچسب: نویسنده: استخدام کار تاريخ: شنبه 29 خرداد 1395 ساعت: 15:22

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